• News
  • Documentation
    Instructions Parameters Release Notes
    Citing, Publications & Tools
  • Download
  • Source

Parameter: export_pepXML

Overview

Indicates creating additional export file of results formatted in pepXML. The pepXML file name is derived from the input file name. This format is required to view results in the Trans-Proteomic Pipeline.

Syntax

[Number]

Versions

1.0.0 - present

Example

export_pepXML = 1
Overview
General Info
Data I/O
database export_pepXML export_percolator MS_data_file percolator_version results_path split_percolator
Data Descriptors
instrument MS1_centroid MS1_resolution MS2_centroid MS2_resolution
Modifications
fixed_modification fixed_modification_protC fixed_modification_protN max_mods_per_peptide modification modification_protC modification_protN
Scoring Algorithm
fragment_bin_offset fragment_bin_size ion_series_A ion_series_B ion_series_C ion_series_X ion_series_Y ion_series_Z
Analysis
aa_mass adduct_sites decoy_filter diagnostic enzyme isotope_error max_adduct_mass max_miscleavages max_peptide_length max_peptide_mass max_spectrum_peaks min_adduct_mass min_peptide_length min_peptide_mass min_spectrum_peaks ppm_tolerance_pre precursor_refinement prefer_precursor_pred reporter_ion reporter_ion_threshold spectrum_processing threads top_count truncate_prot_names
Deprecated Parameters
e_value_depth

Back to top

© 2021 ISB