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Parameter: spectrum_processing

Overview

The MS/MS spectrum processing function will collapse isotope distributions to the monoisotopic peak and reduce the number of peaks to analyze to the number specified with the max_spectrum_peaks parameter.

Set spectrum_processing to 1 to enable the MS/MS spectrum processing function.

Syntax

[Number]

Version

1.0.0 - present

Example

spectrum_processing = 1
Overview
General Info
Data I/O
database export_pepXML export_percolator MS_data_file percolator_version results_path split_percolator
Data Descriptors
instrument MS1_centroid MS1_resolution MS2_centroid MS2_resolution
Modifications
fixed_modification fixed_modification_protC fixed_modification_protN max_mods_per_peptide modification modification_protC modification_protN
Scoring Algorithm
fragment_bin_offset fragment_bin_size ion_series_A ion_series_B ion_series_C ion_series_X ion_series_Y ion_series_Z
Analysis
aa_mass adduct_sites decoy_filter diagnostic enzyme isotope_error max_adduct_mass max_miscleavages max_peptide_length max_peptide_mass max_spectrum_peaks min_adduct_mass min_peptide_length min_peptide_mass min_spectrum_peaks ppm_tolerance_pre precursor_refinement prefer_precursor_pred reporter_ion reporter_ion_threshold spectrum_processing threads top_count truncate_prot_names
Deprecated Parameters
e_value_depth

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